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Bibliography

2014

  1. Adler, D. H., Pluta, J., Kadivar, S., Craige, C., Gee, J. C., Avants, B. B., & Yushkevich, P. A. (2014). Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI. Neuroimage, 84, 505–523. doi:10.1016/j.neuroimage.2013.08.067
  2. Avants, B. B., Libon, D. J., Rascovsky, K., Boller, A., McMillan, C. T., Massimo, L., Coslett, H. B., Chatterjee, A., Gross, R. G., & Grossman, M. (2014). Sparse canonical correlation analysis relates network-level atrophy to multivariate cognitive measures in a neurodegenerative population. Neuroimage, 84, 698–711. doi:10.1016/j.neuroimage.2013.09.048

2013

  1. Hopkins, W. D., & Avants, B. B. (2013). Regional and hemispheric variation in cortical thickness in chimpanzees (Pan troglodytes). J Neurosci, 33(12), 5241–5248. doi:10.1523/JNEUROSCI.2996-12.2013
  2. Kim, J., Avants, B., Whyte, J., & Gee, J. C. (2013). Methodological considerations in longitudinal morphometry of traumatic brain injury. Front Hum Neurosci, 7, 52. doi:10.3389/fnhum.2013.00052
  3. Lawson, G. M., Duda, J. T., Avants, B. B., Wu, J., & Farah, M. J. (2013). Associations between children’s socioeconomic status and prefrontal cortical thickness. Dev Sci, 16(5), 641–652. doi:10.1111/desc.12096
  4. McMillan, C. T., Avants, B., Irwin, D. J., Toledo, J. B., Wolk, D. A., Van Deerlin, V. M., Shaw, L. M., Trojanoswki, J. Q., & Grossman, M. (2013). Can MRI screen for CSF biomarkers in neurodegenerative disease?. Neurology, 80(2), 132–138. doi:10.1212/WNL.0b013e31827b9147
  5. McMillan, C. T., Irwin, D. J., Avants, B. B., Powers, J., Cook, P. A., Toledo, J. B., McCarty Wood, E., Van Deerlin, V. M., Lee, V. M.-Y., Trojanowski, J. Q., & Grossman, M. (2013). White matter imaging helps dissociate tau from TDP-43 in frontotemporal lobar degeneration. J Neurol Neurosurg Psychiatry, 84(9), 949–955. doi:10.1136/jnnp-2012-304418
  6. McMillan, C. T., Toledo, J. B., Avants, B. B., Cook, P. A., Wood, E. M., Suh, E., Irwin, D. J., Powers, J., Olm, C., Elman, L., McCluskey, L., Schellenberg, G. D., Lee, V. M.-Y., Trojanowski, J. Q., Van Deerlin, V. M., & Grossman, M. (2013). Genetic and neuroanatomic associations in sporadic frontotemporal lobar degeneration. Neurobiol Aging. doi:10.1016/j.neurobiolaging.2013.11.029
  7. Tustison, N. J., & Avants, B. B. (2013). Explicit B-spline regularization in diffeomorphic image registration. Front Neuroinform, 7, 39. doi:10.3389/fninf.2013.00039
  8. Tustison, N. J., Johnson, H. J., Rohlfing, T., Klein, A., Ghosh, S. S., Ibanez, L., & Avants, B. B. (2013). Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. Front Neurosci, 7, 162. doi:10.3389/fnins.2013.00162
  9. Weber, M. J., Detre, J. A., Thompson-Schill, S. L., & Avants, B. B. (2013). Reproducibility of functional network metrics and network structure: a comparison of task-related BOLD, resting ASL with BOLD contrast, and resting cerebral blood flow. Cogn Affect Behav Neurosci, 13(3), 627–640. doi:10.3758/s13415-013-0181-7

2012

  1. Avants, B., Dhillon, P., Kandel, B. M., Cook, P. A., McMillan, C. T., Grossman, M., & Gee, J. C. (2012). Eigenanatomy improves detection power for longitudinal cortical change. Med Image Comput Comput Assist Interv, 15(Pt 3), 206–213.
  2. Badea, A., Gewalt, S., Avants, B. B., Cook, J. J., & Johnson, G. A. (2012). Quantitative mouse brain phenotyping based on single and multispectral MR protocols. Neuroimage, 63(3), 1633–1645. doi:10.1016/j.neuroimage.2012.07.021
  3. Seung-Goo Kim, S., Lee, H., Chung, M. K., Hanson, J. L., Avants, B. B., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2012). Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on (42–45). doi:10.1109/ISBI.2012.6235479
  4. Das, S. R., Avants, B. B., Pluta, J., Wang, H., Suh, J. W., Weiner, M. W., Mueller, S. G., & Yushkevich, P. A. (2012). Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI. Neuroimage, 60(2), 1266–1279. doi:10.1016/j.neuroimage.2012.01.098
  5. Datta, R., Lee, J., Duda, J., Avants, B. B., Vite, C. H., Tseng, B., Gee, J. C., Aguirre, G. D., & Aguirre, G. K. (2012). A digital atlas of the dog brain. PLoS One, 7(12), e52140. doi:10.1371/journal.pone.0052140
  6. Ghosh, S. S., Klein, A., Avants, B., & Millman, K. J. (2012). Learning from open source software projects to improve scientific review. Front Comput Neurosci, 6, 18. doi:10.3389/fncom.2012.00018
  7. Gross, R. G., McMillan, C. T., Chandrasekaran, K., Dreyfuss, M., Ash, S., Avants, B., Cook, P., Moore, P., Libon, D. J., Siderowf, A., & Grossman, M. (2012). Sentence processing in Lewy body spectrum disorder: the role of working memory. Brain Cogn, 78(2), 85–93. doi:10.1016/j.bandc.2011.12.004
  8. Hanson, J. L., Chung, M. K., Avants, B. B., Rudolph, K. D., Shirtcliff, E. A., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2012). Structural variations in prefrontal cortex mediate the relationship between early childhood stress and spatial working memory. J Neurosci, 32(23), 7917–7925. doi:10.1523/JNEUROSCI.0307-12.2012
  9. Hanson, J. L., Suh, J. W., Nacewicz, B. M., Sutterer, M. J., Cayo, A. A., Stodola, D. E., Burghy, C. A., Wang, H., Avants, B. B., Yushkevich, P. A., Essex, M. J., Pollak, S. D., & Davidson, R. J. (2012). Robust Automated Amygdala Segmentation via Multi-Atlas Diffeomorphic Registration. Front Neurosci, 6, 166. doi:10.3389/fnins.2012.00166
  10. Jain, V., Duda, J., Avants, B., Giannetta, M., Xie, S. X., Roberts, T., Detre, J. A., Hurt, H., Wehrli, F. W., & Wang, D. J. J. (2012). Longitudinal reproducibility and accuracy of pseudo-continuous arterial spin-labeled perfusion MR imaging in typically developing children. Radiology, 263(2), 527–536. doi:10.1148/radiol.12111509
  11. Kim, S.-G., Lee, H., Chung, M. K., Hanson, J. L., Avants, B. B., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2012). AGREEMENT BETWEEN THE WHITE MATTER CONNECTIVITY BASED ON THE TENSOR-BASED MORPHOMETRY AND THE VOLUMETRIC WHITE MATTER PARCELLATIONS BASED ON DIFFUSION TENSOR IMAGING. Proc IEEE Int Symp Biomed Imaging. doi:10.1109/ISBI.2012.6235479
  12. Libon, D. J., McMillan, C., Avants, B., Boller, A., Morgan, B., Burkholder, L., Chandrasekaran, K., Elman, L., McCluskey, L., & Grossman, M. (2012). Deficits in concept formation in amyotrophic lateral sclerosis. Neuropsychology, 26(4), 422–429. doi:10.1037/a0028668
  13. Adler, D., Liu, A. Y., Pluta, J., Kadivar, S., Orozco, S., Wang, H., Gee, J. C., Avants, B. B., & Yushkevich, P. A. (2012). Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on (294–297). doi:10.1109/ISBI.2012.6235542
  14. Yushkevich, P. A., Wang, H., Pluta, J., & Avants, B. B. (2012). From label fusion to correspondence fusion: A new approach to unbiased groupwise registration. In Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on (956–963). doi:10.1109/CVPR.2012.6247771
  15. Rohlfing, T., & Avants, B. (2012). "Nonparametric Local Smoothing" is not image registration. BMC Res Notes, 5, 610. doi:10.1186/1756-0500-5-610
  16. Tustison, N. J., Avants, B. B., Cook, P. A., Kim, J., Whyte, J., Gee, J. C., & Stone, J. R. (2012). Logical circularity in voxel-based analysis: Normalization strategy may induce statistical bias. Hum Brain Mapp. doi:10.1002/hbm.22211

2011

  1. Ashtari, M., Avants, B., Cyckowski, L., Cervellione, K. L., Roofeh, D., Cook, P., Gee, J., Sevy, S., & Kumra, S. (2011). Medial temporal structures and memory functions in adolescents with heavy cannabis use. J Psychiatr Res, 45(8), 1055–1066. doi:10.1016/j.jpsychires.2011.01.004
  2. Avants, B. B., Tustison, N. J., Song, G., Cook, P. A., Klein, A., & Gee, J. C. (2011). A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage, 54(3), 2033–2044. doi:10.1016/j.neuroimage.2010.09.025
  3. Avants, B. B., Tustison, N. J., Wu, J., Cook, P. A., & Gee, J. C. (2011). An open source multivariate framework for n-tissue segmentation with evaluation on public data. Neuroinformatics, 9(4), 381–400. doi:10.1007/s12021-011-9109-y
  4. Seung-Goo Kim, S., Chung, M. K., Hanson, J. L., Avants, B. B., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2011). Structural connectivity via the tensor-based morphometry. In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on (808–811). doi:10.1109/ISBI.2011.5872528
  5. Kim, S.-G., Chung, M. K., Hanson, J. L., Avants, B. B., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2011). STRUCTURAL CONNECTIVITY VIA THE TENSOR-BASED MORPHOMETRY. Proc IEEE Int Symp Biomed Imaging. doi:10.1109/ISBI.2011.5872528
  6. Morgan, B., Gross, R. G., Clark, R., Dreyfuss, M., Boller, A., Camp, E., Liang, T.-W., Avants, B., McMillan, C. T., & Grossman, M. (2011). Some is not enough: quantifier comprehension in corticobasal syndrome and behavioral variant frontotemporal dementia. Neuropsychologia, 49(13), 3532–3541. doi:10.1016/j.neuropsychologia.2011.09.005
  7. Murphy, K., van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., Cao, K., Du, K., Christensen, G. E., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocker, B., Paragios, N., Navab, N., Gorbunova, V., Sporring, J., de Bruijne, M., Han, X., Heinrich, M. P., Schnabel, J. A., Jenkinson, M., Lorenz, C., Modat, M., McClelland, J. R., Ourselin, S., Muenzing, S. E. A., Viergever, M. A., De Nigris, D., Collins, D. L., Arbel, T., Peroni, M., Li, R., Sharp, G. C., Schmidt-Richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Song, G., Tustison, N., Avants, B., Gee, J. C., Staring, M., Klein, S., Stoel, B. C., Urschler, M., Werlberger, M., Vandemeulebroucke, J., Rit, S., Sarrut, D., & Pluim, J. P. W. (2011). Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging, 30(11), 1901–1920. doi:10.1109/TMI.2011.2158349
  8. Murphy, K. L., van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., Cao, K., Du, K., Christensen, G. E., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocker, B., Paragios, N., Navab, N., Gorbunova, V., Sporring, J., de Bruijne, M., Han, X., Heinrich, M. P., Schnabel, J. A., Jenkinson, M., Lorenz, C., Modat, M., McClelland, J. R., Ourselin, S., Muenzing, S. E. A., Viergever, M. A., De Nigris, D., Collins, D. L., Arbel, T., Peroni, M., Li, R., Sharp, G. C., Schmidt-Richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Song, G., Tustison, N., Avants, B., Gee, J. C., Staring, M., Klein, S., Stoel, B. C., Urschler, M., Werlberger, M., Vandemeulebroucke, J., Rit, S., Sarrut, D., & Pluim, J. P. W. (2011). Evaluation of Registration Methods on Thoracic CT: The EMPIRE10~Challenge. ieee_j_mi, 30(11), 1901–1920. doi:10.1109/TMI.2011.2158349
  9. Tustison, N. J., Avants, B. B., Flors, L., Altes, T. A., de Lange, E. E., Mugler, J. P., 3rd, & Gee, J. C. (2011). Ventilation-based segmentation of the lungs using hyperpolarized (3)He MRI. J Magn Reson Imaging, 34(4), 831–841. doi:10.1002/jmri.22738
  10. Tustison, N. J., Avants, B. B., Siqueira, M., & Gee, J. C. (2011). Topological well-composedness and glamorous glue: a digital gluing algorithm for topologically constrained front propagation. IEEE Trans Image Process, 20(6), 1756–1761. doi:10.1109/TIP.2010.2095021
  11. Wang, H., Das, S. R., Suh, J. W., Altinay, M., Pluta, J., Craige, C., Avants, B., & Yushkevich, P. A. (2011). A learning-based wrapper method to correct systematic errors in automatic image segmentation: consistently improved performance in hippocampus, cortex and brain segmentation. Neuroimage, 55(3), 968–985.

2010

  1. Ash, S., McMillan, C., Gunawardena, D., Avants, B., Morgan, B., Khan, A., Moore, P., Gee, J., & Grossman, M. (2010). Speech errors in progressive non-fluent aphasia. Brain Lang, 113(1), 13–20. doi:10.1016/j.bandl.2009.12.001
  2. Avants, B., Cook, P. A., McMillan, C., Grossman, M., Tustison, N. J., Zheng, Y., & Gee, J. C. (2010). Sparse unbiased analysis of anatomical variance in longitudinal imaging. Med Image Comput Comput Assist Interv, 13(Pt 1), 324–331.
  3. Avants, B. B., Cook, P. A., Ungar, L., Gee, J. C., & Grossman, M. (2010). Dementia induces correlated reductions in white matter integrity and cortical thickness: a multivariate neuroimaging study with sparse canonical correlation analysis. Neuroimage, 50(3), 1004–1016. doi:10.1016/j.neuroimage.2010.01.041
  4. Avants, B. B., Yushkevich, P., Pluta, J., Minkoff, D., Korczykowski, M., Detre, J., & Gee, J. C. (2010). The optimal template effect in hippocampus studies of diseased populations. Neuroimage, 49(3), 2457–2466. doi:10.1016/j.neuroimage.2009.09.062
  5. Farag, C., Troiani, V., Bonner, M., Powers, C., Avants, B., Gee, J., & Grossman, M. (2010). Hierarchical organization of scripts: converging evidence from FMRI and frontotemporal degeneration. Cereb Cortex, 20(10), 2453–2463. doi:10.1093/cercor/bhp313
  6. Grossman, M., Eslinger, P. J., Troiani, V., Anderson, C., Avants, B., Gee, J. C., McMillan, C., Massimo, L., Khan, A., & Antani, S. (2010). The role of ventral medial prefrontal cortex in social decisions: converging evidence from fMRI and frontotemporal lobar degeneration. Neuropsychologia, 48(12), 3505–3512. doi:10.1016/j.neuropsychologia.2010.07.036
  7. Hanson, J. L., Chung, M. K., Avants, B. B., Shirtcliff, E. A., Gee, J. C., Davidson, R. J., & Pollak, S. D. (2010). Early stress is associated with alterations in the orbitofrontal cortex: a tensor-based morphometry investigation of brain structure and behavioral risk. J Neurosci, 30(22), 7466–7472. doi:10.1523/JNEUROSCI.0859-10.2010
  8. Kim, J., Whyte, J., Patel, S., Avants, B., Europa, E., Wang, J., Slattery, J., Gee, J. C., Coslett, H. B., & Detre, J. A. (2010). Resting cerebral blood flow alterations in chronic traumatic brain injury: an arterial spin labeling perfusion FMRI study. J Neurotrauma, 27(8), 1399–1411. doi:10.1089/neu.2009.1215
  9. Klein, A., Ghosh, S. S., Avants, B., Yeo, B. T. T., Fischl, B., Ardekani, B., Gee, J. C., Mann, J. J., & Parsey, R. V. (2010). Evaluation of volume-based and surface-based brain image registration methods. Neuroimage, 51(1), 214–220. doi:10.1016/j.neuroimage.2010.01.091
  10. Tustison, Avants, B. B., Cook, P. A., Zheng, Y., Egan, A., Yushkevich, P. A., & Gee, J. C. (2010). N4ITK: Improved N3~Bias Correction. ieee_j_mi, 29(6), 1310–1320. doi:10.1109/TMI.2010.2046908
  11. Rao, H., Betancourt, L., Giannetta, J. M., Brodsky, N. L., Korczykowski, M., Avants, B. B., Gee, J. C., Wang, J., Hurt, H., Detre, J. A., & Farah, M. J. (2010). Early parental care is important for hippocampal maturation: evidence from brain morphology in humans. Neuroimage, 49(1), 1144–1150. doi:10.1016/j.neuroimage.2009.07.003
  12. Tustison, N. J., Avants, B. B., Cook, P. A., Zheng, Y., Egan, A., Yushkevich, P. A., & Gee, J. C. (2010). N4ITK: improved N3 bias correction. IEEE Trans Med Imaging, 29(6), 1310–1320. doi:10.1109/TMI.2010.2046908
  13. Wang, D. J. J., Bi, X., Avants, B. B., Meng, T., Zuehlsdorff, S., & Detre, J. A. (2010). Estimation of perfusion and arterial transit time in myocardium using free-breathing myocardial arterial spin labeling with navigator-echo. Magn Reson Med, 64(5), 1289–1295. doi:10.1002/mrm.22630
  14. Wang, H., Das, S., Pluta, J., Craige, C., Altinay, M., Avants, B., Weiner, M., Mueller, S., & Yushkevich, P. (2010). Standing on the shoulders of giants: improving medical image segmentation via bias correction. Med Image Comput Comput Assist Interv, 13(Pt 3), 105–112.
  15. Yushkevich, P. A., Avants, B. B., Das, S. R., Pluta, J., Altinay, M., & Craige, C. (2010). Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: an illustration in ADNI 3 T MRI data. Neuroimage, 50(2), 434–445.
  16. Yushkevich, P. A., Wang, H., Pluta, J., Das, S. R., Craige, C., Avants, B. B., Weiner, M. W., & Mueller, S. (2010). Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI. Neuroimage, 53(4), 1208–1224. doi:10.1016/j.neuroimage.2010.06.040

2009

  1. Ash, S., Moore, P., Vesely, L., Gunawardena, D., McMillan, C., Anderson, C., Avants, B., & Grossman, M. (2009). Non-Fluent Speech in Frontotemporal Lobar Degeneration. J Neurolinguistics, 22(4), 370–383. doi:10.1016/j.jneuroling.2008.12.001
  2. Avants, B., Khan, A., McCluskey, L., Elman, L., & Grossman, M. (2009). Longitudinal cortical atrophy in amyotrophic lateral sclerosis with frontotemporal dementia. Arch Neurol, 66(1), 138–139. doi:10.1001/archneurol.2008.542
  3. Bonner, M. F., Vesely, L., Price, C., Anderson, C., Richmond, L., Farag, C., Avants, B., & Grossman, M. (2009). Reversal of the concreteness effect in semantic dementia. Cogn Neuropsychol, 26(6), 568–579. doi:10.1080/02643290903512305
  4. Das, S. R., Avants, B. B., Grossman, M., & Gee, J. C. (2009). Registration based cortical thickness measurement. Neuroimage, 45(3), 867–879. doi:10.1016/j.neuroimage.2008.12.016
  5. Das, S. R., Mechanic-Hamilton, D., Korczykowski, M., Pluta, J., Glynn, S., Avants, B. B., Detre, J. A., & Yushkevich, P. A. (2009). Structure specific analysis of the hippocampus in temporal lobe epilepsy. Hippocampus, 19(6), 517–525. doi:10.1002/hipo.20620
  6. Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M.-C., Christensen, G. E., Collins, D. L., Gee, J., Hellier, P., Song, J. H., Jenkinson, M., Lepage, C., Rueckert, D., Thompson, P., Vercauteren, T., Woods, R. P., Mann, J. J., & Parsey, R. V. (2009). Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage, 46(3), 786–802. doi:10.1016/j.neuroimage.2008.12.037
  7. Massimo, L., Powers, C., Moore, P., Vesely, L., Avants, B., Gee, J., Libon, D. J., & Grossman, M. (2009). Neuroanatomy of apathy and disinhibition in frontotemporal lobar degeneration. Dement Geriatr Cogn Disord, 27(1), 96–104. doi:10.1159/000194658
  8. Pluta, J., Avants, B. B., Glynn, S., Awate, S., Gee, J. C., & Detre, J. A. (2009). Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation. Hippocampus, 19(6), 565–571. doi:10.1002/hipo.20619
  9. Tustison, N. J., Avants, B. B., & Gee, J. C. (2009). Directly manipulated free-form deformation image registration. IEEE Trans Image Process, 18(3), 624–635. doi:10.1109/TIP.2008.2010072
  10. Yushkevich, P. A., Avants, B. B., Pluta, J., Das, S., Minkoff, D., Mechanic-Hamilton, D., Glynn, S., Pickup, S., Liu, W., Gee, J. C., Grossman, M., & Detre, J. A. (2009). A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. Neuroimage, 44(2), 385–398. doi:10.1016/j.neuroimage.2008.08.042

2008

  1. Avants, B., Duda, J. T., Kim, J., Zhang, H., Pluta, J., Gee, J. C., & Whyte, J. (2008). Multivariate analysis of structural and diffusion imaging in traumatic brain injury. Acad Radiol, 15(11), 1360–1375. doi:10.1016/j.acra.2008.07.007
  2. Das, S. R., Mechanic-Hamilton, D., Korczykowski, M., Avants, B. B., Detre, J. A., Gee, J. C., & Yushkevich, P. A. (2008). Spatial correspondence based asymmetry analysis in FMRI. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on (616–619). doi:10.1109/ISBI.2008.4541071
  3. Duda, Avants, B., Kim, J., Zhang, H., Patel, S., Whyte, J., & Gee, J. (2008). Multivariate analysis of thalamo-cortical connectivity loss in TBI. In Computer Vision and Pattern Recognition Workshops, 2008. CVPRW ’08. IEEE Computer Society Conference on (1–8). doi:10.1109/CVPRW.2008.4562992
  4. Kim, J., Avants, B., Patel, S., Whyte, J., Coslett, B. H., Pluta, J., Detre, J. A., & Gee, J. C. (2008). Structural consequences of diffuse traumatic brain injury: a large deformation tensor-based morphometry study. Neuroimage, 39(3), 1014–1026. doi:10.1016/j.neuroimage.2007.10.005
  5. Simon, T. J., Wu, Z., Avants, B., Zhang, H., Gee, J. C., & Stebbins, G. T. (2008). Atypical cortical connectivity and visuospatial cognitive impairments are related in children with chromosome 22q11.2 deletion syndrome. Behav Brain Funct, 4, 25. doi:10.1186/1744-9081-4-25
  6. Sun, H., Avants, B. B., Frangi, A. F., Ordas, S., Gee, J. C., & Yushkevich, P. A. (2008). Branching medial models for cardiac shape representation. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on (1485–1488). doi:10.1109/ISBI.2008.4541289
  7. Sun, H., Avants, B. B., Frangi, A. F., Sukno, F., Geel, J. C., & Yushkevich, P. A. (2008). Cardiac medial modeling and time-course heart wall thickness analysis. Med Image Comput Comput Assist Interv, 11(Pt 2), 766–773.
  8. Yushkevich, P. A., Avants, B. B., Pluta, J., Minkoff, D., Detre, J. A., Grossman, M., & Gee, J. C. (2008). Shape-based alignment of hippocampal subfields: evaluation in postmortem MRI. Med Image Comput Comput Assist Interv, 11(Pt 1), 510–517.
  9. Yushkevich, P. A., Avants, B. B., Pluta, J., Minkoff, D., Pickup, S., Liu, W., Detre, J. A., Grossman, M., & Gee, J. C. (2008). Building an atlas of hippocampal subfields using postmortem MRI. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on (161–164). doi:10.1109/ISBI.2008.4540957

2007

  1. Aguirre, G. K., Komáromy, A. M., Cideciyan, A. V., Brainard, D. H., Aleman, T. S., Roman, A. J., Avants, B. B., Gee, J. C., Korczykowski, M., Hauswirth, W. W., Acland, G. M., Aguirre, G. D., & Jacobson, S. G. (2007). Canine and human visual cortex intact and responsive despite early retinal blindness from RPE65 mutation. PLoS Med, 4(6), e230. doi:10.1371/journal.pmed.0040230
  2. Avants, B., Anderson, C., Grossman, M., & Gee, J. C. (2007). Spatiotemporal normalization for longitudinal analysis of gray matter atrophy in frontotemporal dementia. Med Image Comput Comput Assist Interv, 10(Pt 2), 303–310.
  3. Avants, B. B., Hurt, H., Giannetta, J. M., Epstein, C. L., Shera, D. M., Rao, H., Wang, J., & Gee, J. C. (2007). Effects of heavy in utero cocaine exposure on adolescent caudate morphology. Pediatr Neurol, 37(4), 275–279. doi:10.1016/j.pediatrneurol.2007.06.012
  4. Das, S. R., Avants, B. B., Grossman, M., & Gee, J. C. (2007). Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. In Computer Vision, 2007. ICCV 2007. IEEE 11th International Conference on (1–8). doi:10.1109/ICCV.2007.4409136
  5. Fan, Y., Rao, H., Hurt, H., Giannetta, J., Korczykowski, M., Shera, D., Avants, B. B., Gee, J. C., Wang, J., & Shen, D. (2007). Multivariate examination of brain abnormality using both structural and functional MRI. Neuroimage, 36(4), 1189–1199. doi:10.1016/j.neuroimage.2007.04.009
  6. Ng, L., Pathak, S. D., Kuan, C., Lau, C., Dong, H., Sodt, A., Dang, C., Avants, B., Yushkevich, P., Gee, J. C., Haynor, D., Lein, E., Jones, A., & Hawrylycz, M. (2007). Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain. IEEE/ACM Trans Comput Biol Bioinform, 4(3), 382–393. doi:10.1109/tcbb.2007.1035
  7. Avants, B., Epstein, C. L., & Gee, J. C. (2007). SYMMETRIC SHAPE AVERAGING IN THE DIFFEOMORPHIC SPACE. In Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on (636–639). doi:10.1109/ISBI.2007.356932
  8. Rao, H., Wang, J., Giannetta, J., Korczykowski, M., Shera, D., Avants, B. B., Gee, J., Detre, J. A., & Hurt, H. (2007). Altered resting cerebral blood flow in adolescents with in utero cocaine exposure revealed by perfusion functional MRI. Pediatrics, 120(5), e1245–e1254. doi:10.1542/peds.2006-2596
  9. Schoenemann, P. T., Gee, J., Avants, B., Holloway, R. L., Monge, J., & Lewis, J. (2007). Validation of plaster endocast morphology through 3D CT image analysis. Am J Phys Anthropol, 132(2), 183–192. doi:10.1002/ajpa.20499
  10. Song, G., Avants, B. B., & Gee, J. C. (2007). Multi-start Method with Prior Learning for Image Registration. In Computer Vision, 2007. ICCV 2007. IEEE 11th International Conference on (1–8). doi:10.1109/ICCV.2007.4409159
  11. Tustison, N. J., Avants, B. A., & Gee, J. C. (2007). Improved FFD B-Spline Image Registration. In Computer Vision, 2007. ICCV 2007. IEEE 11th International Conference on (1–8). doi:10.1109/ICCV.2007.4409161
  12. Zhang, H., Avants, B. B., Yushkevich, P. A., Woo, J. H., Wang, S., McCluskey, L. F., Elman, L. B., Melhem, E. R., & Gee, J. C. (2007). High-dimensional spatial normalization of diffusion tensor images improves the detection of white matter differences: an example study using amyotrophic lateral sclerosis. IEEE Trans Med Imaging, 26(11), 1585–1597. doi:10.1109/TMI.2007.906784
  13. Zhang, H., Avants, B. B., Yushkevich, P. A., Woo, J. H., Wang, S., McCluskey, L. F., Elman, L. B., Melhem, E. R., & Gee, J. C. (2007). High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. ieee_j_mi, 26(11), 1585–1597. doi:10.1109/TMI.2007.906784

2006

  1. Avants, B. B., Schoenemann, P. T., & Gee, J. C. (2006). Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex. Med Image Anal, 10(3), 397–412. doi:10.1016/j.media.2005.03.005
  2. Song, Z., Tustison, N., Avants, B., & Gee, J. (2006). Adaptive graph cuts with tissue priors for brain MRI segmentation. In Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE International Symposium on (762–765). doi:10.1109/ISBI.2006.1625028
  3. Song, Z., Tustison, N., Avants, B., & Gee, J. C. (2006). Integrated graph cuts for brain MRI segmentation. Med Image Comput Comput Assist Interv, 9(Pt 2), 831–838.

2005

  1. Avants, B., Grossman, M., & Gee, J. C. (2005). The correlation of cognitive decline with frontotemporal dementia induced annualized gray matter loss using diffeomorphic morphometry. Alzheimer Dis Assoc Disord, 19 Suppl 1, S25–S28.
  2. Sundaram, T. A., Avants, B. B., & Gee, J. C. (2005). Towards a dynamic model of pulmonary parenchymal deformation: evaluation of methods for temporal reparameterization of lung data. Med Image Comput Comput Assist Interv, 8(Pt 2), 328–335.

2004

  1. Avants, B., & Gee, J. C. (2004). Geodesic estimation for large deformation anatomical shape averaging and interpolation. Neuroimage, 23 Suppl 1, S139–S150. doi:10.1016/j.neuroimage.2004.07.010
  2. Avants, B., & Gee, J. C. (2004). Shape averaging with diffeomorphic flows for atlas creation. In Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium on (595–598). doi:10.1109/ISBI.2004.1398608

2003

  1. Avants, B., & Gee, J. (2003). The shape operator for differential analysis of images. Inf Process Med Imaging, 18, 101–113.
  2. Dubb, A., Gur, R., Avants, B., & Gee, J. (2003). Characterization of sexual dimorphism in the human corpus callosum. Neuroimage, 20(1), 512–519.

2002

  1. Avants, B., & Gee, J. (2002). Robust rotations between anatomical curves. In Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on (337–340). doi:10.1109/ISBI.2002.1029262

2001

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      1999