genetic variants data frame from plink data

genetic variants data frame from plink data

plinkVariantsDataFrame(rootFileName, targetSNPs, verbose = FALSE)

Arguments

rootFileName

root for pgen psam and pvar files

targetSNPs

snps to extract (optional - if absent, will get all)

verbose

boolean

Value

dataframes with both variants and subject ids

Author

Avants BB

Examples

# mydf = plinkVariantsDataFrame( fn, c( 'rs6469804', 'rs6859' ) )